species:   Bodot
pid:       PID1080
parent:    Bd-milR33
paralog:   
locus:     SACU01000009.1:664418-664498
matures:   ['CUGGGUGGGCGGGAUUCCUG', 'GGGGCUUUCGCUUUUCCAGGU']
srr:       SRR8374847
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374847.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374847.cram SACU01000009.1:664418-664498

0 out of bounds
42 alignments
42 proper strand
35 stranded perfect matches

        ********************                   *********************             
UCUACAAAGCCUGGGUGGGCGGGAUUCCUGUGUCUCAUGAACGCGCAGGGGCUUUCGCUUUUCCAGGUAUGUUUUUGUUGU
...((((((((((((.(((((((((((((((((.........))))))))).)))))))).))))))).....)))))...
----------CUGGGUGGGCGGGAUUCCUG--------------------------------------------------- l=20 a=2 c
-----------------------------------------------GGGGCUUUCGCUUUUCCAGGU------------- l=21 a=0 c*
----------CUGGGUGGGCGGGAUUCC----------------------------------------------------- l=18 a=23 ma
-------------------------------------------------GGCUUUCGCUUUUCCAGGU------------- l=19 a=0 ma*

-----------UGGGUGGGCGGGAUUCCUG--------------------------------------------------- l=19 a=1 
-----------UGGGUGGGCGGGAUUCCUGUG------------------------------------------------- l=21 a=2 
-----------UGGGUGGGCGGGAUUCCUGUGUa----------------------------------------------- l=23 a=1 
-----------UGGGUGGGCGuGAUUCCUGUGUCU---------------------------------------------- l=24 a=2 
----------CUGGGUGGGCGGGAUUCC----------------------------------------------------- l=18 a=23 (ma)
----------CUGGGUGGGCGGGAUUCa----------------------------------------------------- l=18 a=2 
----------CUGGGUGGGCGGGAUUCCa---------------------------------------------------- l=19 a=1 
----------CUGGGUGGGCGGGAUUCCUG--------------------------------------------------- l=20 a=2 (c)
----------CUGGGUGGGCGGGAUUCCUGU-------------------------------------------------- l=21 a=1 
----------CUGGGUGGGCGGGAUUCCUGUG------------------------------------------------- l=22 a=4 
----------CUGGGUGGGCGGGAUUCCUGUGUC----------------------------------------------- l=24 a=1 
----------CUGGGUGGGCGGGAUUCCUGUGUuU---------------------------------------------- l=25 a=1 
----------CUGGGUGGGCGGGAUUCCUGUGUCU---------------------------------------------- l=25 a=1 

mb-01011
ax-1011001
ku-11
ss-101011111110
fn-111
